Medigue, Claudine : rechercher sur Z-Library

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1

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates,PhotorhabdusandXenorhabdus

Jean-Claude Ogier, Alexandra Calteau, Steve Forst, Heidi Goodrich-Blair, David Roche, Zoé Rouy, Garret Suen, Robert Zumbihl, Alain Givaudan, Patrick Tailliez, Claudine Médigue, Sophie Gaudriault

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2010

2

Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement

Borriss, Rainer, Danchin, Antoine, Harwood, Colin R., Médigue, Claudine, Rocha, Eduardo P.C., Sekowska, Agnieszka, Vallenet, David

Journal:

Microbial Biotechnology

Année:

2018

Langue:

english

Fichier:

PDF, 384 KB

english, 2018

3

Persistent biases in the amino acid composition of prokaryotic proteins

Géraldine Pascal, Claudine Médigue, Antoine Danchin

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 379 KB

english, 2006

4

Extensive recombination events and horizontal gene transfer shaped theLegionella pneumophilagenomes

Laura Gomez-Valero, Christophe Rusniok, Sophie Jarraud, Benoit Vacherie, Zoé Rouy, Valerie Barbe, Claudine Medigue, Jerome Etienne, Carmen Buchrieser

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2011

5

Universal biases in protein composition of model prokaryotes

Géraldine Pascal, Claudine Médigue, Antoine Danchin

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 324 KB

english, 2005

6

Exploring thePenicillium marneffeigenome

Kwok-yung Yuen, Géraldine Pascal, Samson S. Y. Wong, Philippe Glaser, Patrick C. Y. Woo, Frank Kunst, James J. Cai, Elim Y. L. Cheung, Claudine Médigue, Antoine Danchin

Journal:

Archives of Microbiology

Année:

2003

Langue:

english

Fichier:

PDF, 369 KB

english, 2003

7

A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus

Anne Derbise, Viviane Chenal-Francisque, Flavie Pouillot, Corinne Fayolle, Marie-Christine Prévost, Claudine Médigue, Bernard Joseph Hinnebusch, Elisabeth Carniel

Journal:

Molecular Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 491 KB

english, 2007

8

Frankia alni proteome under nitrogen-fixing and nitrogen-replete conditions

Nicole Alloisio, Servane Félix, Joëlle Maréchal, Petar Pujic, Zoé Rouy, David Vallenet, Claudine Medigue, Philippe Normand

Journal:

Physiologia Plantarum

Année:

2007

Langue:

english

Fichier:

PDF, 273 KB

english, 2007

9

Exploring the genomes of Frankia

Philippe Normand, Clothilde Queiroux, Louis S. Tisa, David R. Benson, Zoé Rouy, Stéphane Cruveiller, Claudine Médigue

Journal:

Physiologia Plantarum

Année:

2007

Langue:

english

Fichier:

PDF, 618 KB

english, 2007

10

Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes

Stéphanie Bocs, Antoine Danchin, Claudine Médigue

Journal:

BMC Bioinformatics

Année:

2002

Langue:

english

Fichier:

PDF, 441 KB

english, 2002

11

Growth ofYersinia pseudotuberculosisin human plasma: impacts on virulence and metabolic gene expression

Marie-Laure Rosso, Sylvie Chauvaux, Rodrigue Dessein, Caroline Laurans, Lionel Frangeul, Céline Lacroix, Angèle Schiavo, Marie-Agnès Dillies, Jeannine Foulon, Jean-Yves Coppée, Claudine Médigue, Elisa

Journal:

BMC Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2008

12

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data

Stéphanie Weiss, Christine Carapito, Jessica Cleiss, Sandrine Koechler, Evelyne Turlin, Jean-Yves Coppee, Michaël Heymann, Valérie Kugler, Magalie Stauffert, Stéphane Cruveiller, Claudine Médigue, Ala

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 431 KB

english, 2009

13

Annotation, comparison and databases for hundreds of bacterial genomes

Claudine Médigue, Ivan Moszer

Journal:

Research in Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 932 KB

english, 2007

14

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 826 KB

english, 2012

15

Experimental evolution of nodule intracellular infection in legume symbionts

Guan, Su Hua, Gris, Carine, Cruveiller, Stéphane, Pouzet, Cécile, Tasse, Lena, Leru, Aurélie, Maillard, Aline, Médigue, Claudine, Batut, Jacques, Masson-Boivin, Catherine, Capela, Delphine

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2013

16

Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles

Remenant, Benoît, de Cambiaire, Jean-Charles, Cellier, Gilles, Jacobs, Jonathan M., Mangenot, Sophie, Barbe, Valérie, Lajus, Aurélie, Vallenet, David, Medigue, Claudine, Fegan, Mark, Allen, Caitilyn,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 563 KB

english, 2011

17

Evolutionary history and genetic parallelism affect correlated responses to evolution

Le Gac, Mickael, Cooper, Tim F., Cruveiller, Stéphane, Médigue, Claudine, Schneider, Dominique

Journal:

Molecular Ecology

Année:

2013

Langue:

english

Fichier:

PDF, 357 KB

english, 2013

18

Small variable segments constitute a major type of diversity of bacterial genomes at the species level

Fabrice Touzain, Erick Denamur, Claudine Médigue, Valérie Barbe…

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2010

19

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

Goudenège, David, Labreuche, Yannick, Krin, Evelyne, Ansquer, Dominique, Mangenot, Sophie, Calteau, Alexandra, Médigue, Claudine, Mazel, Didier, Polz, Martin F, Le Roux, Frédérique

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 868 KB

english, 2013

20

Profiling the orphan enzymes

Maria Sorokina,Mark Stam,Claudine Médigue,Olivier Lespinet…

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2014

21

Detection of new genes in a bacterial genome using Markov models for three gene classes

Borodovsky, Mark, Mclninch, James D., Koonin, Eugene V., Rudd, Kenneth E., Médigue, Claudine, Danchin, Antoine

Journal:

Nucleic Acids Research

Année:

1995

Langue:

english

Fichier:

PDF, 872 KB

english, 1995

22

16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage

Fahy, Anne, Giloteaux, Ludovic, Bertin, Philippe, Le Paslier, Denis, Médigue, Claudine, Weissenbach, Jean, Duran, Robert, Lauga, Béatrice

Journal:

Microbial Ecology

Année:

2015

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2015

23

A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments

Muller, Daniel, Médigue, Claudine, Koechler, Sandrine, Barbe, Valérie, Barakat, Mohamed, Talla, Emmanuel, Bonnefoy, Violaine, Krin, Evelyne, Arsène-Ploetze, Florence, Carapito, Christine, Chandler, Mi

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 766 KB

english, 2007

24

Experimental Evolution of a Plant Pathogen into a Legume Symbiont

Marchetti, Marta, Capela, Delphine, Glew, Michelle, Cruveiller, Stéphane, Chane-Woon-Ming, Béatrice, Gris, Carine, Timmers, Ton, Poinsot, Véréna, Gilbert, Luz B., Heeb, Philipp, Médigue, Claudine, Bat

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 2.83 MB

english, 2010

25

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes

Smith, Adam Alexander Thil, Belda, Eugeni, Viari, Alain, Medigue, Claudine, Vallenet, David, Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2012

26

Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella

Engel, Philipp, Salzburger, Walter, Liesch, Marius, Chang, Chao-Chin, Maruyama, Soichi, Lanz, Christa, Calteau, Alexandra, Lajus, Aurélie, Médigue, Claudine, Schuster, Stephan C., Dehio, Christoph, Gu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 789 KB

english, 2011

27

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Maddamsetti, Rohan, Hatcher, Philip J., Cruveiller, Stéphane, Médigue, Claudine, Barrick, Jeffrey E., Lenski, Richard E.

Journal:

Molecular Biology and Evolution

Année:

2015

Langue:

english

Fichier:

PDF, 304 KB

english, 2015

28

RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori

Redko, Yulia, Galtier, Eloïse, Arnion, Hélène, Darfeuille, Fabien, Sismeiro, Odile, Coppée, Jean-Yves, Médigue, Claudine, Weiman, Marion, Cruveiller, Stéphane, De Reuse, Hilde

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2016

29

Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species

Bisch, Gaëlle, Ogier, Jean-Claude, Médigue, Claudine, Rouy, Zoé, Vincent, Stéphanie, Tailliez, Patrick, Givaudan, Alain, Gaudriault, Sophie

Journal:

Genome Biology and Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 977 KB

english, 2016

30

Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria

Plucain, Jessica, Suau, Antonia, Cruveiller, Stéphane, Médigue, Claudine, Schneider, Dominique, Le Gac, Mickaël

Journal:

BMC Evolutionary Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2016

31

A new network representation of the metabolism to detect chemical transformation modules

Sorokina, Maria, Medigue, Claudine, Vallenet, David

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1016 KB

english, 2015

32

Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium

Gerbore, Jonathan, Brutel, Aline, Lemainque, Arnaud, Mairey, Barbara, Médigue, Claudine, Vallenet, David, Lefort, Francois, Grizard, Damien

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 145 KB

english, 2016

33

Tempo and mode of genome evolution in a 50,000-generation experiment

Tenaillon, Olivier, Barrick, Jeffrey E., Ribeck, Noah, Deatherage, Daniel E., Blanchard, Jeffrey L., Dasgupta, Aurko, Wu, Gabriel C., Wielgoss, Sébastien, Cruveiller, Stéphane, Médigue, Claudine, Schn

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 4.23 MB

english, 2016

34

The Frankia alni Symbiotic Transcriptome

Alloisio, Nicole, Queiroux, Clothilde, Fournier, Pascale, Pujic, Petar, Normand, Philippe, Vallenet, David, Médigue, Claudine, Yamaura, Masatoshi, Kakoi, Kentaro, Kucho, Ken-ichi

Journal:

Molecular Plant-Microbe Interactions

Année:

2010

Langue:

english

Fichier:

PDF, 428 KB

english, 2010

35

Draft Genome Sequence of Carnobacterium divergens V41, a Bacteriocin-Producing Strain

Remenant, Benoît, Borges, Frédéric, Cailliez-Grimal, Catherine, Revol-Junelles, Anne-Marie, Marché, Laurent, Lajus, Aurélie, Médigue, Claudine, Pilet, Marie-France, Prévost, Hervé, Zagorec, Monique

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 149 KB

english, 2016

36

GROOLS: reactive graph reasoning for genome annotation through biological processes

Mercier, Jonathan, Josso, Adrien, Médigue, Claudine, Vallenet, David

Journal:

BMC Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 930 KB

english, 2018

37

Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

Trujillo, Martha E., Bacigalupe, Rodrigo, Pujic, Petar, Igarashi, Yasuhiro, Benito, Patricia, Riesco, Raúl, Médigue, Claudine, Normand, Philippe, Brüggemann, Holger

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 7.48 MB

english, 2014

38

Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia

Mornico, Damien, Miché, Lucie, Béna, Gilles, Nouwen, Nico, Verméglio, André, Vallenet, David, Smith, Alexander A.T., Giraud, Eric, Médigue, Claudine, Moulin, Lionel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2011

39

Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs

Dias, Graciela M., Bidault, Adeline, Le Chevalier, Patrick, Choquet, Gwenaëlle, Der Sarkissian, Clio, Orlando, Ludovic, Medigue, Claudine, Barbe, Valerie, Mangenot, Sophie, Thompson, Cristiane C., Tho

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2018

40

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

Krin, Evelyne, Pierlé, Sebastian Aguilar, Sismeiro, Odile, Jagla, Bernd, Dillies, Marie-Agnès, Varet, Hugo, Irazoki, Oihane, Campoy, Susana, Rouy, Zoé, Cruveiller, Stéphane, Médigue, Claudine, Coppée,

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2018

41

MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data

Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Gautreau, Guillaume, Josso, Adrien, Lajus, Aurélie, Langlois, Jordan, Pereira, Hugo, Planel, Rémi, Roche, David, Rollin, J

Journal:

Briefings in Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2017

42

MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data

Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Gautreau, Guillaume, Josso, Adrien, Lajus, Aurélie, Langlois, Jordan, Pereira, Hugo, Planel, Rémi, Roche, David, Rollin, J

Journal:

Briefings in Bioinformatics

Année:

2017

Fichier:

PDF, 1.78 MB

2017